Custom Config Help

Alright, I know I typically help around here, I need help.
This was working earlier and it's completely drawn a blank and I don't want to spend hours combing through this countless times to figure out that stupid mistake I've made...

Oh btw, sorry for the poorly formatted code, it does that for some reason.

I've marked out all the errors in the code with LINE (LINE NUMBER)

Alright, So I can't figure out why my code gives me this error

Code (Text):

[18:18:49 WARN]: java.lang.IllegalArgumentException: The embedded resource 'plugins/CustomCrates/Crates/BasicCrate.crate' cannot be found in plugins/CustomCrates.jar
[18:18:49 WARN]: at org.bukkit.plugin.java.JavaPlugin.saveResource(JavaPlugin.java:252)
[18:18:49 WARN]: at me.ztowne13.customcrates.utils.FileUtil.saveDefaults(FileUtil.java:116)
[18:18:49 WARN]: at me.ztowne13.customcrates.CustomCrates.firstLoadFiles(CustomCrates.java:68)
[18:18:49 WARN]: at me.ztowne13.customcrates.utils.FileUtil.reload(FileUtil.java:55)
[18:18:49 WARN]: at me.ztowne13.customcrates.utils.FileUtil.saveDefaults(FileUtil.java:111)
[18:18:49 WARN]: at me.ztowne13.customcrates.CustomCrates.loadFiles(CustomCrates.java:57)
[18:18:49 WARN]: at me.ztowne13.customcrates.CustomCrates.onEnable(CustomCrates.java:25)
[18:18:49 WARN]: at org.bukkit.plugin.java.JavaPlugin.setEnabled(JavaPlugin.java:321)
[18:18:49 WARN]: at a lot of useless stuff...

[18:18:49 ERROR]: Error occurred while enabling CustomCrates v1.0 (Is it up to date?)
java.lang.IllegalArgumentException: The embedded resource 'plugins/CustomCrates/Messages.yml' cannot be found in plugins/CustomCrates.jar
at org.bukkit.plugin.java.JavaPlugin.saveResource(JavaPlugin.java:252) ~[spigot.jar:git-Spigot-2f787bd-1a1bc08]
at me.ztowne13.customcrates.utils.FileUtil.saveDefaults(FileUtil.java:116) ~[?:?]
at me.ztowne13.customcrates.CustomCrates.loadFiles(CustomCrates.java:57) ~[?:?]
at me.ztowne13.customcrates.CustomCrates.onEnable(CustomCrates.java:25) ~[?:?]
at org.bukkit.plugin.java.JavaPlugin.setEnabled(JavaPlugin.java:321) ~[spigot.jar:git-Spigot-2f787bd-1a1bc08]
at org.bukkit.plugin.java.JavaPluginLoader.enablePlugin(JavaPluginLoader.java:335) [spigot.jar:git-Spigot-2f787bd-1a1bc08]
at org.bukkit.plugin.SimplePluginManager.enablePlugin(SimplePluginManager.java:405) [spigot.jar:git-Spigot-2f787bd-1a1bc08]
at a lot of useless more stuff :)
 

My FileUtil class (Yes It's a mess, I copied it off the internet like a year ago.)

Code (Text):

static HashMap<String,FileUtil> map = new HashMap<String,FileUtil>();

String name;
String directory = "";
CustomCrates cc;

public FileUtil(CustomCrates cc, String name, String directory)
{
this.name = name;
this.cc = cc;
this.directory = directory;
map.put(name, this);
}

public FileUtil(CustomCrates cc, String name)
{
this.name = name;
this.cc = cc;
map.put(name, this);
}


FileConfiguration Data = null;
File DataFile = null;

public void reload()
{
    if (DataFile == null)
    {
    DataFile = new File(new File(cc.getDataFolder() + directory), name);

    if(name.equalsIgnoreCase("Messages.yml"))
    {
    if(!hasFolder("Crates"))
    {
    new File(cc.getDataFolder() + directory).mkdir();
    }
    try
    {
LINE 55    cc.firstLoadFiles();
    }
    catch(Exception exc)
    {
    exc.printStackTrace();
    }
    }
    }

    Data = YamlConfiguration.loadConfiguration(DataFile);

InputStream defConfigStream = cc.getResource(name);

    if (defConfigStream != null)

    {

        YamlConfiguration defConfig = YamlConfiguration.loadConfiguration(defConfigStream);

        Data.setDefaults(defConfig);

    }

}


public boolean hasFolder(String path)

{

for(File file: cc.getDataFolder().listFiles())

{

return file.isDirectory() && file.getName().equalsIgnoreCase(path.replace("/", ""));

}

returnfalse;

}


publicvoid save()

{

    if (Data == null || DataFile == null)

    {

        return;

    }

   

    try

    {

        get().save(DataFile);

    }

    catch (IOException ex)

    {

    cc.getLogger().log(Level.SEVERE, "Could not save config to " + DataFile, ex);

    }

}


public FileConfiguration get()

{

    if (Data == null)

    {

        reload();

    }

    return Data;

}



public void saveDefaults()

{

        if(DataFile == null)

        {

LINE 111            reload();

        }

       

        if(!DataFile.exists())

        {

LINE 116            cc.saveResource(cc.getDataFolder() + directory + "/" + name, false);

        }

    }
 

My onEnable()

Code (Text):

public void onEnable()

{

LINE 25 loadFiles();

registerAll();


this.du = new DebugUtils();


this.settings = new Settings(this);

settings.load();


run();

}
 

My firstLoadFiles method

Code (Text):

public void firstLoadFiles()

{

String[] firstFiles = new String[]{"BasicCrate", "BeginnerCrate", "MiddleCrate", "MasterCrate"};

for(String newFile: firstFiles)

{

LINE 68 new FileUtil(this, newFile + ".crate", "/Crates").saveDefaults();

}

}
 

Line 57 of Custom Crates

Code (Text):

LINE 57 message.saveDefaults();
 

Thanks for any help

 

@Skionz
Really? http://gyazo.com/1ac5b60232df53fff1c588a96ac58da1 That isn't correct?

 

@Skionz
Done, it has all the files there still.

 

@DarkSeraphim Ahh, I think I know what you mean and I think i may no the issue... Let me try a thing here real quick